# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "scStability" in publications use:'
type: software
license: MIT
title: 'scStability: Measuring the Stability of Dimension Reduction and Cluster Assignment
  in scRNA-Seq Experiments'
version: 1.0.3
doi: 10.32614/CRAN.package.scStability
abstract: Provides functions for evaluating the stability of low-dimensional embeddings
  and cluster assignments in single‑cell RNA sequencing (scRNA‑seq) datasets. Starting
  from a principal component analysis (PCA) object, users can generate multiple replicates
  of t‑Distributed Stochastic Neighbor Embedding (t‑SNE) or Uniform Manifold Approximation
  and Projection (UMAP) embeddings. Embedding stability is quantified by computing
  pairwise Kendall’s Tau correlations across replicates and summarizing the distribution
  of correlation coefficients. In addition to dimensionality reduction, 'scStability'
  assesses clustering consistency using either Louvain or Leiden algorithms and calculating
  the Normalized Mutual Information (NMI) between all pairs of cluster assignments.
  For background on UMAP and t-SNE algorithms, see McInnes et al. (2020, <https://doi.org/10.21105/joss.00861>)
  and van der Maaten & Hinton (2008, <https://github.com/lvdmaaten/bhtsne>), respectively.
authors:
- family-names: Abrahams
  given-names: Ben
  email: ben.abrahams.de@gmail.com
repository: https://b-de-01.r-universe.dev
commit: 1a5540664f0deefaefdb25fde705e26f18b62b7a
date-released: '2025-06-23'
contact:
- family-names: Abrahams
  given-names: Ben
  email: ben.abrahams.de@gmail.com